3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11977

Details:

PFam ID : PF11977

PFam Domain Description : Zc3h12a-like Ribonuclease NYN domain

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 201

Average sequence length: 142.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11977	A8X1P2_CAEBR_67_217	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11977	Q9N2L8_CAEEL_49_217	100

Sequence based PCA Plot of the family - PF11977 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=4 Length=17
Motif3 Start=123 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay