3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11976

Details:

PFam ID : PF11976

PFam Domain Description : Ubiquitin-2 like Rad60 SUMO-like

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 358

Average sequence length: 69.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11976	B5YLV7_THAPS_254_328	33.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11976	Q54BY1_DICDI_784_876	100

Sequence based PCA Plot of the family - PF11976 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=44 Length=8
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay