3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11975

Details:

PFam ID : PF11975

PFam Domain Description : Family 4 glycosyl hydrolase C-terminal domain

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 598

Average sequence length: 214.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11975	E8T4M7_THEA1_10_118	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11975	A8RAB6_9FIRM_189_443	100

Sequence based PCA Plot of the family - PF11975 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=164 Length=8
Motif2 Start=174 Length=11
Motif3 Start=231 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay