3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11974

Details:

PFam ID : PF11974

PFam Domain Description : Alpha-2-macroglobulin MG1 domain

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 283

Average sequence length: 102.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11974	E8T4M7_THEA1_10_118	71.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11974	C8PRI8_9SPIO_588_704	100

Sequence based PCA Plot of the family - PF11974 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=18 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay