3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11973

Details:

PFam ID : PF11973

PFam Domain Description : NQRA C-terminal domain

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 239

Average sequence length: 51.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11973	D4H1M5_DENA2_256_304	35.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11973	C3JAV9_9PORP_281_333	99.5

Sequence based PCA Plot of the family - PF11973 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=18
Motif2 Start=1 Length=8
Motif3 Start=35 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay