3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11972

Details:

PFam ID : PF11972

PFam Domain Description : HTH DNA binding domain

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 57

Average sequence length: 53.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11972	A8LUA6_DINSH_300_353	9.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11972	D0DC93_9RHOB_268_325	100

Sequence based PCA Plot of the family - PF11972 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=42 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay