3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11970

Details:

PFam ID : PF11970

PFam Domain Description : G protein-coupled glucose receptor regulating Gpa2 C-term

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 85

Average sequence length: 73.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11970	A2R6B2_ASPNC_251_308	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11970	Q6C142_YARLI_406_484	100

Sequence based PCA Plot of the family - PF11970 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay