3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11966

Details:

PFam ID : PF11966

PFam Domain Description : Fibronectin-binding repeat

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 29

Average sequence length: 76.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11966	A3HTM6_9BACT_1_126	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11966	Q5LZ05_STRT1_1_55	100

Sequence based PCA Plot of the family - PF11966 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay