3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11965

Details:

PFam ID : PF11965

PFam Domain Description : Domain of unknown function (DUF3479)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 151

Average sequence length: 158.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11965	A3HTM6_9BACT_1_126	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11965	A5UW99_ROSS1_2_161	100

Sequence based PCA Plot of the family - PF11965 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=2 Length=8
Motif3 Start=39 Length=8
Motif4 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay