3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11961

Details:

PFam ID : PF11961

PFam Domain Description : Domain of unknown function (DUF3475)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 77

Average sequence length: 54.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11961	A8WQT9_CAEBR_8_60	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11961	A2XRH4_ORYSI_26_70	93.4

Sequence based PCA Plot of the family - PF11961 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=12 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay