3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11960

Details:

PFam ID : PF11960

PFam Domain Description : Domain of unknown function (DUF3474)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 297

Average sequence length: 80.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11960	A8WQT9_CAEBR_8_60	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11960	F0XB65_9PEZI_3_73	100

Sequence based PCA Plot of the family - PF11960 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=23 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay