3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11959

Details:

PFam ID : PF11959

PFam Domain Description : Domain of unknown function (DUF3473)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 129

Average sequence length: 131.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11959	D4IPY0_9BACT_130_256	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11959	D7W4S3_9FLAO_139_281	100

Sequence based PCA Plot of the family - PF11959 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay