3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11958

Details:

PFam ID : PF11958

PFam Domain Description : Domain of unknown function (DUF3472)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 81

Average sequence length: 168.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11958	D2U899_XANAP_81_231	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11958	E9GRM1_DAPPU_116_310	100

Sequence based PCA Plot of the family - PF11958 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay