3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11957

Details:

PFam ID : PF11957

PFam Domain Description : THO complex subunit 1 transcription elongation factor

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 135

Average sequence length: 400.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11957	A5BRJ0_VITVI_240_404	97.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11957	Q6CKD4_KLULA_82_632	100

Sequence based PCA Plot of the family - PF11957 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=91 Length=8
Motif2 Start=76 Length=8
Motif3 Start=232 Length=8
Motif4 Start=390 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay