3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11956

Details:

PFam ID : PF11956

PFam Domain Description : Ankyrin-G binding motif of KCNQ2-3

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 11

Average sequence length: 92.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11956	A2Q2R5_MEDTR_2_138	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11956	Q4TAB9_TETNG_827_920	100

Sequence based PCA Plot of the family - PF11956 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay