3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11951

Details:

PFam ID : PF11951

PFam Domain Description : Fungal specific transcription factor domain

Number of Sequence in 50% Dataset : 1070

Number of Sequence in Full Dataset : 2089

Average sequence length: 283.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11951	A3EUU8_9BACT_1_117	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11951	B2B6Q7_PODAN_384_630	99.2

Sequence based PCA Plot of the family - PF11951 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=340 Length=8
Motif2 Start=295 Length=8
Motif3 Start=116 Length=8
Motif4 Start=380 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay