3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11946

Details:

PFam ID : PF11946

PFam Domain Description : Domain of unknown function (DUF3463)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 102

Average sequence length: 139.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11946	Q97C03_THEVO_188_327	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11946	B9XKG5_9BACT_236_387	100

Sequence based PCA Plot of the family - PF11946 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=3 Length=8
Motif2 Start=117 Length=14
Motif3 Start=68 Length=8
Motif4 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay