3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11941

Details:

PFam ID : PF11941

PFam Domain Description : Domain of unknown function (DUF3459)

Number of Sequence in 50% Dataset : 376

Number of Sequence in Full Dataset : 904

Average sequence length: 89.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11941	A0LAK5_MAGSM_2_211	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11941	D1ABU5_THECD_573_652	97.1

Sequence based PCA Plot of the family - PF11941 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=11
Motif2 Start=20 Length=8
Motif3 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay