3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11940

Details:

PFam ID : PF11940

PFam Domain Description : Domain of unknown function (DUF3458)

Number of Sequence in 50% Dataset : 132

Number of Sequence in Full Dataset : 484

Average sequence length: 356.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11940	A0LAK5_MAGSM_2_211	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11940	F0VMB5_NEOCA_787_857	100

Sequence based PCA Plot of the family - PF11940 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=373 Length=8
Motif2 Start=414 Length=8
Motif3 Start=299 Length=8
Motif4 Start=123 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay