3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11938

Details:

PFam ID : PF11938

PFam Domain Description : TLR4 regulator and MIR-interacting MSAP

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 208

Average sequence length: 106.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11938	A7RSQ2_NEMVE_43_189	12.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11938	D8TWF0_VOLCA_1153_1318	100

Sequence based PCA Plot of the family - PF11938 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay