3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11936

Details:

PFam ID : PF11936

PFam Domain Description : Domain of unknown function (DUF3454)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 31

Average sequence length: 61.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11936	D6X555_TRICA_2267_2317	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11936	O16004_LYTVA_2425_2489	96.6

Sequence based PCA Plot of the family - PF11936 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay