3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11935

Details:

PFam ID : PF11935

PFam Domain Description : Domain of unknown function (DUF3453)

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 137

Average sequence length: 214.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11935	B7FTF9_PHATC_230_368	81.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11935	D5G5W3_TUBMM_85_346	100

Sequence based PCA Plot of the family - PF11935 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay