3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11934

Details:

PFam ID : PF11934

PFam Domain Description : Domain of unknown function (DUF3452)

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 109

Average sequence length: 136.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11934	E9CHS1_9EUKA_80_229	48.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11934	Q7Q5E8_ANOGA_63_205	100

Sequence based PCA Plot of the family - PF11934 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=103 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay