3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11931

Details:

PFam ID : PF11931

PFam Domain Description : Domain of unknown function (DUF3449)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 123

Average sequence length: 185.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11931	E1F0N1_GIAIA_225_461	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11931	Q6CIR1_KLULA_319_529	100

Sequence based PCA Plot of the family - PF11931 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=109 Length=26
Motif2 Start=187 Length=8
Motif3 Start=88 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay