3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11930

Details:

PFam ID : PF11930

PFam Domain Description : Domain of unknown function (DUF3448)

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 1741

Average sequence length: 81.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11930	E6ZKB4_9BASI_2_86	96.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11930	Q18496_CAEEL_33_121	100

Sequence based PCA Plot of the family - PF11930 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=78 Length=11
Motif2 Start=18 Length=11
Motif3 Start=55 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay