3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11929

Details:

PFam ID : PF11929

PFam Domain Description : Domain of unknown function (DUF3447)

Number of Sequence in 50% Dataset : 150

Number of Sequence in Full Dataset : 1109

Average sequence length: 73.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11929	A2FUA9_TRIVA_150_246	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11929	A2EY43_TRIVA_1_41	100

Sequence based PCA Plot of the family - PF11929 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=46 Length=8
Motif2 Start=2 Length=18
Motif3 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay