3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11928

Details:

PFam ID : PF11928

PFam Domain Description : Domain of unknown function (DUF3446)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 88

Average sequence length: 75.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11928	B3TJU5_SALSA_93_137	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11928	C9WKI2_9TELE_1_67	97.7

Sequence based PCA Plot of the family - PF11928 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay