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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11926
Details:

PFam ID : PF11926

PFam Domain Description : Domain of unknown function (DUF3444)

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 172

Average sequence length: 178.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF11926B9SW58_RICCO_462_50391.8
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF11926D7SVH9_VITVI_262_479100
Sequence based PCA Plot of the family - PF11926 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=17
Motif2 Start=1 Length=8
Motif3 Start=42 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay