3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11923

Details:

PFam ID : PF11923

PFam Domain Description : Domain of unknown function (DUF3441)

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 145

Average sequence length: 110.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11923	C1ECV2_MICSR_1068_1204	93.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11923	C1ECV2_MICSR_1068_1204	100

Sequence based PCA Plot of the family - PF11923 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=3 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay