3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11921

Details:

PFam ID : PF11921

PFam Domain Description : Domain of unknown function (DUF3439)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 80

Average sequence length: 63.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11921	A5HIA3_PETMA_5_44	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11921	Q2YE25_EPTST_162_276	100

Sequence based PCA Plot of the family - PF11921 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=21
Motif2 Start=30 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay