3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11919

Details:

PFam ID : PF11919

PFam Domain Description : Domain of unknown function (DUF3437)

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 119

Average sequence length: 87.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11919	E9IXH7_SOLIN_18_75	78.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11919	D2W0E7_NAEGR_1780_1878	100

Sequence based PCA Plot of the family - PF11919 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=39 Length=8
Motif2 Start=21 Length=17
Motif3 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay