3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11918

Details:

PFam ID : PF11918

PFam Domain Description : Domain of unknown function (DUF3436)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 269

Average sequence length: 52.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11918	C1H2L9_PARBA_17_109	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11918	B0FTG3_APODA_1_25	100

Sequence based PCA Plot of the family - PF11918 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=8
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay