3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11916

Details:

PFam ID : PF11916

PFam Domain Description : Vacuolar protein 14 C-terminal Fig4p binding

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 118

Average sequence length: 153.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11916	B7FQK7_PHATC_899_1119	51.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11916	B7FQK7_PHATC_899_1119	100

Sequence based PCA Plot of the family - PF11916 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=128 Length=8
Motif2 Start=74 Length=8
Motif3 Start=10 Length=8
Motif4 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay