3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11909

Details:

PFam ID : PF11909

PFam Domain Description : NADH-quinone oxidoreductase cyanobacterial subunit N

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 55

Average sequence length: 145.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11909	A9SZB8_PHYPA_1_130	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11909	A9SZB8_PHYPA_1_130	100

Sequence based PCA Plot of the family - PF11909 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=30 Length=8
Motif3 Start=46 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay