3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11907

Details:

PFam ID : PF11907

PFam Domain Description : Domain of unknown function (DUF3427)

Number of Sequence in 50% Dataset : 119

Number of Sequence in Full Dataset : 251

Average sequence length: 245.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11907	B5J4E6_9RHOB_2_149	96.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11907	E6K2B3_PARDN_790_1120	100

Sequence based PCA Plot of the family - PF11907 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=93 Length=8
Motif3 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay