3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11905

Details:

PFam ID : PF11905

PFam Domain Description : Domain of unknown function (DUF3425)

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 228

Average sequence length: 130.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11905	E7A1D3_9BASI_591_807	95.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11905	A4QYJ0_MAGO7_517_690	100

Sequence based PCA Plot of the family - PF11905 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=156 Length=8
Motif3 Start=19 Length=11
Motif4 Start=34 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay