3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11904

Details:

PFam ID : PF11904

PFam Domain Description : GPCR-chaperone

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 157

Average sequence length: 288.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11904	D0MTB8_PHYIT_26_152	75.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11904	F2U9J5_9EUKA_162_466	100

Sequence based PCA Plot of the family - PF11904 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=11
Motif4 Start=243 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay