3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11898

Details:

PFam ID : PF11898

PFam Domain Description : Domain of unknown function (DUF3418)

Number of Sequence in 50% Dataset : 125

Number of Sequence in Full Dataset : 419

Average sequence length: 529.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11898	B2SEP0_FRATM_760_1422	87.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11898	B2SEP0_FRATM_760_1422	100

Sequence based PCA Plot of the family - PF11898 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=160 Length=8
Motif2 Start=284 Length=8
Motif3 Start=207 Length=8
Motif4 Start=190 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay