3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11896

Details:

PFam ID : PF11896

PFam Domain Description : Domain of unknown function (DUF3416)

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 274

Average sequence length: 187.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11896	C6A9K7_BIFLB_49_133	93.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11896	D0YPC2_9ACTO_26_254	100

Sequence based PCA Plot of the family - PF11896 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=221 Length=8
Motif2 Start=12 Length=32
Motif3 Start=112 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay