3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11895

Details:

PFam ID : PF11895

PFam Domain Description : Domain of unknown function (DUF3415)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 69

Average sequence length: 76.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11895	Q2TF20_PLEPU_140_175	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11895	B0DVT9_LACBS_280_345	100

Sequence based PCA Plot of the family - PF11895 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=14
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay