3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11893

Details:

PFam ID : PF11893

PFam Domain Description : Domain of unknown function (DUF3413)

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 138

Average sequence length: 238.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11893	A9N9Z7_COXBR_1_271	97.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11893	Q15QF2_PSEA6_1_257	100

Sequence based PCA Plot of the family - PF11893 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=113 Length=8
Motif4 Start=263 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay