3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11892

Details:

PFam ID : PF11892

PFam Domain Description : Domain of unknown function (DUF3412)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 128

Average sequence length: 121.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11892	D8UAG1_VOLCA_331_415	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11892	E1VCQ3_HALED_378_498	100

Sequence based PCA Plot of the family - PF11892 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=17
Motif2 Start=102 Length=17
Motif3 Start=29 Length=11
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay