3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11890

Details:

PFam ID : PF11890

PFam Domain Description : Domain of unknown function (DUF3410)

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 179

Average sequence length: 78.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11890	A4A3J0_9GAMM_315_388	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11890	F2G602_ALTMD_306_396	100

Sequence based PCA Plot of the family - PF11890 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=18
Motif3 Start=41 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay