3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11886

Details:

PFam ID : PF11886

PFam Domain Description : Domain of unknown function (DUF3406)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 46

Average sequence length: 214.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11886	D7M3H2_ARALL_837_946	46.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11886	E1ZE64_9CHLO_514_795	100

Sequence based PCA Plot of the family - PF11886 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=24 Length=8
Motif2 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay