3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11884

Details:

PFam ID : PF11884

PFam Domain Description : Domain of unknown function (DUF3404)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 35

Average sequence length: 229.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11884	E1EKK9_VIBPA_14_182	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11884	Q1YXZ4_PHOPR_16_281	100

Sequence based PCA Plot of the family - PF11884 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=44 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay