3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11883

Details:

PFam ID : PF11883

PFam Domain Description : Domain of unknown function (DUF3403)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 199

Average sequence length: 44.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11883	B7F2L0_ORYSJ_137_178	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11883	D7LIA6_ARALL_436_484	99.4

Sequence based PCA Plot of the family - PF11883 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=17
Motif2 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay