3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11882

Details:

PFam ID : PF11882

PFam Domain Description : Domain of unknown function (DUF3402)

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 125

Average sequence length: 379.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11882	E3X3Z4_ANODA_1_341	64.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11882	E7A0I3_9BASI_542_1016	100

Sequence based PCA Plot of the family - PF11882 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay