3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11878

Details:

PFam ID : PF11878

PFam Domain Description : Domain of unknown function (DUF3398)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 77

Average sequence length: 92.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11878	Q4RL38_TETNG_82_178	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11878	A7RW14_NEMVE_75_175	100

Sequence based PCA Plot of the family - PF11878 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=33 Length=18
Motif3 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay