3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11873

Details:

PFam ID : PF11873

PFam Domain Description : Domain of unknown function (DUF3393)

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 111

Average sequence length: 193.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11873	Q0VJ85_9GAMM_5_127	89.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11873	B3U4R2_9BACT_2_236	100

Sequence based PCA Plot of the family - PF11873 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=117 Length=8
Motif2 Start=104 Length=8
Motif3 Start=170 Length=11
Motif4 Start=187 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay