3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11871

Details:

PFam ID : PF11871

PFam Domain Description : Domain of unknown function (DUF3391)

Number of Sequence in 50% Dataset : 179

Number of Sequence in Full Dataset : 343

Average sequence length: 129.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11871	C3IGL6_BACTU_3_54	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11871	C4ZHP9_EUBR3_3_141	100

Sequence based PCA Plot of the family - PF11871 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay